SPORE in Leukemia
Principal Investigator: Daniel Link, MD
The Specialized Programs of Research Excellence (SPORE) are the cornerstone of the National Cancer Institute’s effort to promote collaborative, interdisciplinary translational cancer research. Each SPORE is focused on a specific organ site and is designed to enable the rapid and efficient movement of basic scientific findings into clinical settings as well as to determine the biological basis for observations made in individuals with cancer.
The Washington University SPORE in Leukemia is one of only three SPOREs in the United States focused on leukemias and myelodysplastic syndromes (MDS). Washington University has been at the forefront of genomic studies in AML and MDS. This ongoing basic research has identified several novel recurring mutations in MDS/AML and is defining the importance of clonal heterogeneity in AML or MDS to clinical outcome. In this SPORE, we leverage our expertise in cancer genomics, immunology, and hematopoiesis to develop innovative translational research in leukemia. Our long-term goal is to develop novel biomarkers and treatments for leukemias and MDS and to develop and promote innovative translational leukemia research.
Our SPORE in Leukemia includes the following four translational projects:
- Basic Science Co-Leader: Timothy Ley, MD
- Clinical Science Co-Leader: John Welch, MD, PhD
- Basic Science Co-Leader: Daniel Link, MD
- Clinical Science Co-Leader: Geoffrey Uy, MD
- Basic Science Co-Leader: Timothy Graubert, MD
- Clinical Science Co-Leader: Matthew Walter, MD
- Basic Science Co-Leader: John F. DiPersio, MD, PhD
- Clinical Science Co-Leader: Peter Westevelt, MD, PhD
These projects are supported by three shared resources:
- Biospecimen Processing
This SPORE also supports a Career Development Program to recruit and mentor new investigators in translational leukemia research and a Developmental Research Program to support innovative translational concepts.
SPORE Shared Resources (Cores)
Core A: Biospecimen Processing
The Biospecimen Processing Core (Core A) is responsible for the identification and enrollment of every patient referred to the Siteman Cancer Center with newly diagnosed and relapsed hematologic malignancy (excluding multiple myeloma). The pathologic material from these patients will be banked using the existing Siteman Cancer Center (SCC) Tissue Processing Core (TPC), and clinical data will be tracked prospectively in a clinical database.
Core B: Biostatistics
Director: J. Philip Miller, PhD
The Biostatistics Core provides resources to assist in the planning, conduct and analysis of the proposed research in such a way that quantitative analyses are appropriate and illuminating. The Core also assists in the dissemination of appropriate information both within and external to the SPORE and the Siteman Cancer Center (SCC). The Core is staffed by a dedicated biostatistician for each of the 4 projects. In addition a designated faculty member is devoted to collaborations concerning specialized bioinformatics issues. The Biostatistics Core will serve as a resource and collaborator for the four main projects proposed in this application, Career Development Program and Developmental Research Program projects and the SPORE Cores.
Core C: Administration
Director: Daniel Link, MD
The Administration Core provides executive oversight and administrative support for all of the projects and cores that comprise the Leukemia SPORE. The goal of the Administration Core is to monitor the activities of all of the program components, to comply with all local and federal guideline for grant administration, and to facilitate communication and collaboration among the program members.
Career Enhancement Program (CEP)
The goal is to recruit and support new independent investigators in the field of translational leukemia research. The research initiatives that will be funded by the CDP are expected to have a major translational component, focusing on leukemia etiology, diagnosis, early detection, treatment, or population science.
Junior faculty (Instructor or Assistant Professor) without RO1 or equivalent grant or senior post-doctoral fellows (PhD, MD, or MD-PhD) who have a written commitment from their department chair indicating promotion to Instructor or Assistant Professor by the time of the award also will be eligible.
One to two awards of $60,000 (direct cost) will be made annually. The second year of funding is contingent upon adequate progress.
The current application cycle is now closed.
Applications will be accepted in Fall, 2018. For additional information, please contact Amy Abrams at email@example.com.
Matthew Christopher, MD, PhD
Project title: Error-Corrected Sequencing for Early Detection of AML Relapse After Stem Cell Transplant
Acute Myeloid Leukemia (AML) is a life-threatening blood disease that affects about 20,000 new patients every year. For many patients, the best chance for a cure is by getting a hematopoietic stem cell transplantation (HSCT) from a donor. Unfortunately, many patients with AML—as many as 40-50%—still relapse even after transplantation, and the chances of curing patients in this setting are low.
Most relapses after HSCT occur within the first two years, and patients undergo surveillance bone marrow biopsies at different time points during this period. If there is evidence that patients are about to relapse, they can get some therapy to try to prevent the recurrence. The methods for trying to predict relapse while the patient is still in remission are relatively insensitive, and it is possible that relapses could be treated more effectively if they are detected earlier. For this reason, many researchers are trying to develop better techniques for predicting relapse. In a preliminary study, our group showed that by using next-generation sequencing with deep coverage, some AML-associated mutations AML can be detected in remission samples up to six months before relapse.
In this proposal, we will go back to a larger group of patient samples and look for AML mutations in patients who ultimately relapsed as well as those who never relapsed. We will test for the presence of mutations in the samples from relapse group and confirm that we can’t find mutations in the patients who didn’t relapse. If successful, we will propose a clinical trial to test whether early prediction of AML relapse by mutation detection can predict and prevent relapse after HSCT.
Grazia Abou-Ezzi, PhD
Project title: TGFB Signaling in Mesenchymal Stromal Cells
Hematopoietic stem/progenitor cells (HSPCs) reside in a specialized microenvironment within the bone marrow called the bone marrow niche. The bone marrow niche is a mix of multiple cell types, including mesenchymal stromal cells. In this study, we focus on understanding how the bone marrow niche is altered in mouse models of myeloproliferative neoplasms (MPNs). Transforming growth factor beta (TGF-β) is known to regulate mesenchymal stromal cell differentiation; interestingly, TGF-β levels are significantly increased in MPN patients. We predict that TGF-β disturbs the bone marrow niche by altering mesenchymal stromal cell homeostasis and, furthermore, that this may lead to the splenomegaly observed in MPN patients. Recent data have shown that TGF-β is a major driver of bone marrow fibrosis. Although the cell of origin of bone marrow fibrosis is largely unknown, we predict that high levels of TGF-β stimulate the secretion of fibronectin and collagen by osteoblastic cells.
To investigate Aim 1, we generated a mouse model in which TGF-β signaling is specifically suppressed in bone marrow mesenchymal cells. Using this model, we will characterize the role that bone marrow mesenchymal cells influenced by TGF-β signaling play in hematopoietic recovery following myelosuppression. In Aim 2, the MPL W515L retroviral transplant model will be used to induce bone marrow fibrosis. Transduced cells will be transplanted into the mouse model described in relation to Aim 1, followed by correlative analysis to assess changes in the bone marrow as fibrosis develops.
The ultimate goal of this study is to translate fundamental observations regarding TGF-β signaling effects on bone marrow mesenchymal cells and the hematopoietic compartment under myelosuppressive and myeloproliferative conditions into advancing care for patients with MPNs. We predict that the results of this study will improve the outcomes of these patients by providing critical insight into optimizing hematopoietic recovery after therapy with myelosuppressive agents. Furthermore, as there are currently no effective treatments for bone marrow fibrosis, our work may provide the foundation for novel therapeutic strategies to treat bone marrow fibrosis in patients with MPNs.
Developmental Research Program (DRP)
The goal is to support innovative translational leukemia research. Proposed projects will be reviewed with the intent that they will develop sufficiently, within one-two years, to be submitted for external peer-reviewed funding. For projects with a clinical trial, they must be ready to study activation within six months of award.
All faculty members (instructor level or higher) are eligible. In addition, senior post-doctoral fellows who have a written commitment from their department chair indicating promotion to Instructor or Assistant Professor by the time of the award will be eligible. Preference will be given to junior faculty or established investigators with a new translational leukemia research focus.
Up to three projects will be awarded a maximum of $70,000 (direct costs) on an annual basis. Selected projects may be considered for a second year of funding based on a competitive renewal.
The current application cycle is now open. Please email your submission by May 1, 2018 to Amy Abrams at firstname.lastname@example.org. Funding will begin July 1, 2018.
Matthew Cooper, PhD
Title: “Off the shelf” fratricide resistant CAR-T for the treatment of T Cell malignancies
T cell malignancies represent a class of devastating hematologic cancers with high rates of relapse and mortality in both children and adults for which there are currently no effective or targeted therapies. Despite intensive multi-agent chemotherapy regimens, fewer than 50% of adults and 75% of children with T-ALL survive beyond five years. For those who relapse after initial therapy, salvage chemotherapy regimens induce remissions in 20-40% of cases. Thus, a targeted therapy against T cell malignancies represents a significant unmet medical need.
T cells engineered to express a chimeric antigen receptor (CAR) are a promising cancer immunotherapy. Such targeted therapies have shown great potential for inducing both remissions and even long-term, relapse-free survival in patients with B cell leukemia and lymphoma. However, shared expression of target antigens between T effector cells and T cell malignancies has limited development of CAR-T targeting T cell neoplasms due to unintended self-killing of CAR-T (fratricide) and an inability to collect sufficient T cell for CAR-T generation from the patient. Using CRISPR/Cas9 gene editing techniques, we have overcome these obstacles to generate CAR-T effective at killing T cell cancers. The goal of this project is to further develop gene edited CAR-T against T cell malignancies, the first clinically feasible adoptive T cell therapy for T cell leukemia and T cell non-Hodgkin’s lymphoma.
Qiang Zhang, PhD
Project title: Stabilizing AML Cells for Comprehensive Global Proteomic Analysis
In studying the causes of leukemia, researchers have discovered multiple genomic faults that are associated with disease progression and recurrence. DNA testing overlooks another potential contributor to disease, proteins that may be driving leukemic cells and also could be targeted with existing and new treatments. If DNA can be described as the body’s genetic blueprint, proteins may be thought of as the construction workers who carry out the plan.
Studying the blueprint can be vital to understanding genetic diseases, including leukemia, but that focus also means that some problems arising with the workers may be missed. Proteogenomics is emerging as a science to integrate these two streams of patient information. This work will assess the potential and develop the facility to use genomically well-characterized banked leukemia cells for next-generation proteomics. Success will make possible the study of large numbers of patients using proteogenomics to discover new biomarkers and drug targets for leukemia.
Project title: Enhancing MHC-haploidentical HCT with donor memory-like NK cell adoptive immunotherapy
This project develops a new strategy to harness the immune system to fight leukemia, and pilots this idea an early phase clinical trial for patients with relapsed or refractory (rel/ref) acute myeloid leukemia (AML). The study harnesses natural killer (NK) cells, which are immune cells that a naturally able to recognize and eliminate cancerous cells. Recent work has shown that activating donor NK cells with three cytokines (IL-12, IL-15 and IL-18), hormone signals used by immune cells to communicate, resulted in a long-lived, highly potent NK cell type called memory-like NK cells. This project combines memory-like NK cell therapy and a standard “mini” hematopoietic cell transplant from the same donor, and will test the ability of memory-like NK cells to expand, proliferate, persist, and fight leukemia in patients with leukemia. This developmental project will lead a larger phase 2 study using this same strategy for patient with relapsed or refractory AML.
Grant Challen, PhD
Project title: Identifying novel dependencies in pre-leukemic HSCs
Epigenetics is a term used to refer to modifications to the genome which change the properties of cells, without changing the sequence of the DNA itself. Epigenetic modifications such as DNA methylation act like a blueprint to maintain cell identity by informing each specific cell type which genes should be switched on or off. Abnormal distribution of epigenetic marks is associated with a variety of human cancers, most notably blood cancer such as acute myeloid leukemia (AML) and myelodysplastic syndromes (MDS). Furthermore, genome sequencing studies have revealed that almost half of all patients with AML and MDS have genetic mutations in some component of the molecular machinery that is responsible for regulating these DNA methylation marks. Two of the most commonly mutated genes in these diseases are DNMT3A and TET2, which respectively function to add and remove DNA methylation from the genome. However, analysis of these patients has not revealed consistent DNA methylation differences that explain how the mutations cause cancer. As these mutations often make the cancers resistant to conventional chemotherapy, there is an urgent need to better understand how these mutations contribute to cancer to develop more optimal therapies.
Our hypothesis is that epigenetic changes other than DNA methylation are key contributors to the disease in patients with these mutations. In this project, we will identify epigenetic pathways which are crucial to the survival of cells with DNMT3A and TET2 mutations with the goal of identifying new avenues for therapy in these patients. Our primary tools to study this are mouse models we have in the lab which carry genetic mutations in the genes DNMT3A and TET2, which we have shown develop a disease resembling human MDS. We will use the bone marrow stem cells from these mice to identify what other factors are important for cancer initiation by “knocking out” specific epigenetic regulators using a genome editing tool called CRISPR/Cas9. This technology allows us to very rapidly and specifically remove other epigenetic modifying genes from the cells with pre-existing DNMT3A and TET2 mutations. We then track all the mutant cells, and identify which genes are necessary for cancer by identifying which cells “disappear” from the mice over time using high-throughput genome sequencing. Any mutations which disappear means that a particular gene was required for the survival of the cancer cells, as without that gene the cancer cells die and are lost. Thus, any mutations which disappear represent new drug targets for patients with DNMT3A and TET2 mutations.
Human T-cell leukemia virus type 1 (HTLV-1) is the cause of a T cell malignancy, adult T-cell leukemia lymphoma (ATL). This is a highly refractory malignancy, lacking effective treatment approaches, with a long-term survival rate of less than four percent. The current project is based on exciting new data that mutations are common in genes that code for components of a pathway that allows the T cell receptor to induce T cell growth. Notably, we found that one of these components, protein kinase C beta appears to be activated in about one third of cases through mutation, and an additional third of cases through alteration of proteins that turn-on protein kinase c. We will determine if the most common protein kinase c mutation is important for the growth of T cells in mice, and the genes that are turned on by this mutant protein. We will also determine if the protein kinase c mutation is important for growth of human ATL cells in immunodeficient mice. In both murine models, we will determine what genes are activated by this mutant form of protein kinase c. In addition, we will determine if a protein kinase c inhibitor, enzastaurin blocks T cell proliferation. Overall, these studies have the potential to lead to an important clinical advance in ATL treatment, which could have applications in other leukemias or lymphomas.
The Siteman Cancer Center offers many types of clinical trials, also called clinical studies or research protocols. At any given time, Siteman has more than 350 therapeutic trials under way.
For more information about any of the clinical trials listed on this site, call 314-747-7222 or 800-600-3606 toll free or e-mail email@example.com.
SPORE In Touch Patient E-Newsletter
As part of its commitment to patient care, The Washington University SPORE in Leukemia team at Siteman Cancer Center publishes its e-newsletter, SPORE In Touch, for leukemia patients and their families. The goal of this newsletter is to provide valuable information as an extension of our mission to offer world-class care, research and resources within the clinical and medical research communities.
SPORE In Touch is a digital publication that is distributed via email three times a year, and focuses on issues related to leukemia, myelodysplastic syndromes or stem cell transplantation. It features patient stories, physician interviews, clinical trial information, events and other milestones.
To learn more about the publication, please email InTouch@dom.wustl.edu or call 314-747-2274.
To sign up to receive the newsletter, please click here.
You are of course free to remove yourself from the newsletter distribution list at any time. We will never sell your information to a third party or use your contact information for any communication outside of the newsletter.
Information for Patients
To Make an Appointment:
- What Are Leukemia and Myelodysplastic Syndromes?
- What’s New in Leukemia Research at Siteman
- Leukemia Patient Stories
- Bone Marrow and Stem Cell Transplantation
Siteman Cancer Center SPORE in Leukemia
Investigators and Staff
John DiPersio, MD, PhD
Leader, Project 4
Timothy Graubert, MD
Co-Leader, Project 3
Timothy Ley, MD
Co-Leader, Project 1
Daniel Link, MD
Principal Investigator; Leader, Project 2; Director, Core C; Co-Chair, DRP
J. Philip Miller, PhD
Director, Core B
Laura Schuettpelz, MD
Geoff Uy, MD
Co-Chair, CEP; Co-Leader, Project 2
Matthew Walter, MD
Co-Chair, CEP; Co-Leader, Project 3
Mark Watson, MD
Co-Director, Core A
John Welch, MD, PhD
Leader, Project 1
Peter Westervelt, MD, PhD
Director, Core A; Co-Leader, Project 4